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Novembre, John
One or more keywords matched the following properties of Novembre, John
PropertyValue
first name John
full name John Novembre
keywords Data Science
label Novembre, John
overview The Novembre research group uses computational tools to study genetic diversity in natural populations. Our goal is to develop widely used statistical methods for intelligently extracting information from large-scale genomic data with the aim to improve understanding of: (1) basic genomic biology, (2) the biology of heritable disease traits, (3) the genetic basis of evolutionary processes, and (4) the history and evolution of various species, especially humans. From a disciplinary perspective, most of the ideas we use are from theoretical population genetics, statistical genetics, and computational statistics. Much of our work is invigorated by addressing data from emerging genotyping and sequencing technologies applied to large or particularly interesting population samples.
One or more keywords matched the following items that are connected to Novembre, John
Item TypeName
Concept Agriculture
Concept Amylases
Concept Acclimatization
Concept Aged, 80 and over
Concept Animals, Domestic
Concept Adaptation, Physiological
Concept Aged
Concept Algorithms
Concept Alleles
Concept Altitude
Concept Adult
Concept Asia
Concept Animals
Concept Hypoxia
Concept Computer Simulation
Concept Archaeology
Concept Base Sequence
Concept Bayes Theorem
Concept Attitude
Concept DNA Damage
Concept Body Height
Concept Blood Glucose
Concept Ecology
Concept Breeding
Concept California
Concept Biological Evolution
Concept Chromosome Mapping
Concept Codon
Concept United Kingdom
Concept Conservation of Natural Resources
Concept Hemoglobins
Concept Demography
Concept Homozygote
Concept Disease
Concept DNA, Mitochondrial
Concept Elephants
Concept Diet
Concept Emigration and Immigration
Concept Drosophila
Concept Dogs
Concept Europe
Concept Gene Frequency
Concept Jews
Concept Lactose Intolerance
Concept HIV
Concept Eye Color
Concept DNA
Concept Drug Resistance
Concept Genes
Concept Fossils
Concept Geography
Concept Iceland
Concept Italy
Concept Genetics, Medical
Concept Genetics, Population
Concept Language
Concept Pharmacogenetics
Concept Models, Genetic
Concept Models, Theoretical
Concept Monte Carlo Method
Concept Public Opinion
Concept Middle Aged
Concept Recombination, Genetic
Concept Mutation
Concept Nepal
Concept Selection, Genetic
Concept Pedigree
Concept Patients
Concept Skeleton
Concept Female
Concept Probability
Concept Genetic Markers
Concept Regression Analysis
Concept Hair Color
Concept Haplotypes
Concept Population Growth
Concept Risk Factors
Concept Seasons
Concept Isotopes
Concept Risk
Concept Skin Pigmentation
Concept Spain
Concept Humans
Concept Body Mass Index
Concept Time Factors
Concept Transcription, Genetic
Concept Software
Concept Transients and Migrants
Concept Indians, South American
Concept Genome
Concept Triglycerides
Concept Genetic Variation
Concept Male
Concept Mathematics
Concept Mediterranean Region
Concept Multifactorial Inheritance
Concept Transcription Initiation Site
Concept Principal Component Analysis
Concept Inflammatory Bowel Diseases
Concept Bias
Concept Normal Distribution
Concept Likelihood Functions
Concept Mexico
Concept Artifacts
Concept Lupus Erythematosus, Systemic
Concept Multiple Sclerosis
Concept Gene Expression
Concept Sequence Alignment
Concept Case-Control Studies
Concept Alternative Splicing
Concept Sequence Analysis, DNA
Concept Ecosystem
Concept North America
Concept History, 15th Century
Concept History, 18th Century
Concept Genome, Insect
Concept Sample Size
Concept Evolution, Molecular
Concept Founder Effect
Concept Receptors, CCR5
Concept Genetic Association Studies
Concept Gene-Environment Interaction
Concept History, 21st Century
Concept History, Medieval
Concept Inheritance Patterns
Concept Biological Specimen Banks
Concept Songbirds
Concept beta-Defensins
Concept Databases, Genetic
Concept Gene Expression Profiling
Concept Pigmentation
Concept Population Density
Concept Population Dynamics
Concept Gene Flow
Concept Surveys and Questionnaires
Concept RNA, Ribosomal, 16S
Concept Genetic Research
Concept Molecular Targeted Therapy
Concept Segmental Duplications, Genomic
Concept High-Throughput Nucleotide Sequencing
Concept History, 17th Century
Concept Northwestern United States
Concept Models, Statistical
Concept Autoimmunity
Concept DNA Copy Number Variations
Concept Phylogeography
Concept Caves
Concept Linkage Disequilibrium
Concept Genome, Human
Concept Tibet
Concept Arabidopsis
Concept Wolves
Concept Animal Migration
Concept Microsatellite Repeats
Concept Metagenomics
Concept Laron Syndrome
Concept History, 20th Century
Concept KCNQ1 Potassium Channel
Concept Basic Helix-Loop-Helix Transcription Factors
Concept B-Cell Activating Factor
Concept Genome-Wide Association Study
Concept Pandemics
Concept Mutation Rate
Concept History, 16th Century
Concept History, 19th Century
Concept Lipid Metabolism
Concept Base Composition
Concept Carrier Proteins
Concept Cytosine
Concept Family Health
Concept Genetic Testing
Concept Genotype
Concept Heterozygote
Concept Horses
Concept Immunity
Concept Longitudinal Studies
Concept Phenotype
Concept Phylogeny
Concept Population
Concept Sequence Analysis, RNA
Concept Computational Biology
Concept Quantitative Trait, Heritable
Concept Genetic Predisposition to Disease
Concept Polymorphism, Single Nucleotide
Concept Genomics
Concept Databases, Nucleic Acid
Concept MicroRNAs
Concept Quantitative Trait Loci
Concept Genetic Drift
Concept Chromosomes, Human, X
Concept Chromosomes, Human, Y
Concept History, Ancient
Concept INDEL Mutation
Concept Young Adult
Concept Microbial Consortia
Academic Article Spatial patterns of variation due to natural selection in humans.
Academic Article Recombination rates in admixed individuals identified by ancestry-based inference.
Academic Article Interpreting principal component analyses of spatial population genetic variation.
Academic Article Genes mirror geography within Europe.
Academic Article Fast model-based estimation of ancestry in unrelated individuals.
Academic Article The geographic spread of the CCR5 Delta32 HIV-resistance allele.
Academic Article An abundance of rare functional variants in 202 drug target genes sequenced in 14,002 people.
Academic Article Principal component analysis under population genetic models of range expansion and admixture.
Academic Article Maximum likelihood estimation of frequencies of known haplotypes from pooled sequence data.
Academic Article Characterizing bias in population genetic inferences from low-coverage sequencing data.
Academic Article Novel statistical methods for integrating genetic and stable isotope data to infer individual-level migratory connectivity.
Academic Article Power analysis of artificial selection experiments using efficient whole genome simulation of quantitative traits.
Academic Article forqs: forward-in-time simulation of recombination, quantitative traits and selection.
Academic Article Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European.
Academic Article Genome sequencing highlights the dynamic early history of dogs.
Academic Article Height-reducing variants and selection for short stature in Sardinia.
Academic Article Visualizing spatial population structure with estimated effective migration surfaces.
Academic Article Demographically-Based Evaluation of Genomic Regions under Selection in Domestic Dogs.
Academic Article Conflation of Short Identity-by-Descent Segments Bias Their Inferred Length Distribution.
Academic Article Visualizing the geography of genetic variants.
Academic Article Recent advances in the study of fine-scale population structure in humans.
Academic Article A Temporal Perspective on the Interplay of Demography and Selection on Deleterious Variation in Humans.
Academic Article Population- and individual-specific regulatory variation in Sardinia.
Academic Article Genomic history of the Sardinian population.
Academic Article Using pseudoalignment and base quality to accurately quantify microbial community composition.
Academic Article Estimating Time to the Common Ancestor for a Beneficial Allele.
Academic Article Natural Selection and Origin of a Melanistic Allele in North American Gray Wolves.
Academic Article Similar genomic proportions of copy number variation within gray wolves and modern dog breeds inferred from whole genome sequencing.
Academic Article Inference and visualization of DNA damage patterns using a grade of membership model.
Academic Article The genetic prehistory of the Andean highlands 7000 years BP though European contact.
Academic Article The first horse herders and the impact of early Bronze Age steppe expansions into Asia.
Academic Article Detecting past and ongoing natural selection among ethnically Tibetan women at high altitude in Nepal.
Academic Article Estimating recent migration and population-size surfaces.
Academic Article De Novo Mutation Rate Estimation in Wolves of Known Pedigree.
Academic Article Genetic Landscapes Reveal How Human Genetic Diversity Aligns with Geography.
Academic Article Genetic history from the Middle Neolithic to present on the Mediterranean island of Sardinia.
Academic Article A variant-centric perspective on geographic patterns of human allele frequency variation.
Academic Article Fast and flexible estimation of effective migration surfaces.
Grant Refining mutation rates and measures of purifying selection with an application to understanding the impact of non-coding variation on neuropsychiatric diseases
Academic Article Parental relatedness through time revealed by runs of homozygosity in ancient DNA.
Academic Article Haplotype-based inference of the distribution of fitness effects.
Academic Article Properties of 2-locus genealogies and linkage disequilibrium in temporally structured samples.
Academic Article The background and legacy of Lewontin's apportionment of human genetic diversity.
Academic Article Population genetic models for the spatial spread of adaptive variants: A review in light of SARS-CoV-2 evolution.
Concept Gastrointestinal Microbiome
Concept Domestication
Concept Body Remains
Concept DNA, Ancient
Concept Whole Genome Sequencing
Concept Human Genetics
Concept Islands
Concept Human Migration
Concept Microbiota
Concept Grassland
Concept Datasets as Topic
Grant Extending Tools for Visualization of Geographic Structure in Population Genomic Data
Grant Tools for Visualization of Geographic Structure in Population Genomic Data
Grant Population Genetic Consequences of Recent Explosive Population Growth in Humans
Grant Haplotype-based analysis methods for population genomics
Academic Article Intestinal microbiota of Nearctic-Neotropical migratory birds vary more over seasons and years than between host species.
Academic Article A rarefaction approach for measuring population differences in rare and common variation.
Academic Article The design of mapping populations: Impacts of geographic scale on genetic architecture and mapping efficacy for defense and immunity.
Academic Article Mexican Biobank advances population and medical genomics of diverse ancestries.
Grant Theory, Methods, and Resources for Understanding and Leveraging Spatial Variation in Population Genetic Data
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